Choose from the following options to record information about your samples, such as sample ID and which index adapters are used for pooling.
Use Sequencing Analysis Viewer or BaseSpace Sequence Hub to monitor real-time quality metrics during a run.
To analyze sequencing data, choose from the following options:
The NovaSeq X Plus Sequencing System performs secondary analysis using the on-intsrument Illumina DRAGEN BIO-IT Platform server. Refer to the NovaSeq X Plus Product Documentation for more information.
Genome Name | Display Name | Species | GTF Available |
---|---|---|---|
hg19_alt_masked+cnv+hla+rna_v2 | Homo sapiens [UCSC] hg19 Alt Masked v2 | Homo sapiens [Human] | Yes |
hg19_alt_masked_graph+cnv+hla+rna_v2 | Homo sapiens [UCSC] hg19 Alt Masked v2 Graph | Homo sapiens [Human] | Yes |
hs37d5+cnv+rna | Homo sapiens [NCBI] hs37d5 | Homo sapiens [Human] | Yes |
hs37d5_graph_based | Homo sapiens [NCBI] hs37d5 Graph | Homo sapiens [Human] | Yes |
hg38_alt_masked+cnv+hla+rna_v2 | Homo sapiens [1000 Genomes] hg38 Alt Masked v2 | Homo sapiens [Human] | Yes |
hg38_alt_masked_graph+cnv+hla+rna_v2 | Homo sapiens [1000 Genomes] hg38 Alt Masked v2 Graph | Homo sapiens [Human] | Yes |
hg38-noalt-with-decoy | Homo sapiens [1000 Genomes] hg38 No Alt Haps | Homo sapiens [Human] | Yes |
A_Thaliana | A. thaliana [TAIR] TAIR10 | Arabidopsis Thaliana | No |
eschColi_K12_1 | E. coli [NCBI] K12 MG1655 | Escherichia Coli [Strain K12] | No |
mm10 | Mus musculus [UCSC] mm10 | Mus Musculus [House Mouse] | Yes |
phix | Microvirus Escherichia virus phiX174 [NCBI]PhiX | PhiX | No |
rn6 | Rattus norvegicus [UCSC] rn6 | Rattus Norvegicus [Norway Rat] | Yes |
Rhodobacter_sphaeroides_2.4.1_12905 | R.sphaeroides [NCBI] 2.4.1 | Rhodobacter Sphaeroides [Bacterium] | No |
Bacillus_cereus_ATCC_10987 | B. cereus [NCBI] ATCC_10987 | Bacillus Cereus [Bacterium] | No |
WBcel235 | C. elegans [Ensembl] WBcel235 | Caenorhabditis Elegans [Roundworm] | No |
eschColi_K12_1 | E.Coli Strain K12 | Escherichia Coli [Strain K12] | No |