Performing a run requires one HiSeq 3000/4000 Cluster Kit and one HiSeq 3000/4000 SBS Kit.
For other system requirements and compatible products, see HiSeq 4000 Compatibility & Requirements.
The HiSeq 3000/4000 Cluster Kit includes a patterned flow cell, a cBot manifold, two boxes, and an accessory kit. The flow cell format depends on the kit:
| Quantity | Reagent | Description | 
| 1 | cBot Reagent Plate | PE Kit—cBot reagent plate, PE SR Kit—cBot reagent plate, SR | 
| 1 | RSB | Resuspension Buffer | 
| 1 | EPX1 | Enhanced Pattern Cluster Mix 1 | 
| 1 | EPX2 | Enhanced Pattern Cluster Mix 2 | 
| 1 | EPX3 | Enhanced Pattern Cluster Mix 3 | 
| Quantity | Reagent | Description | 
| 1 | HRM | HT Resynthesis Mix | 
| 1 | HLM2 | HT Linearization Mix 2 | 
| 1 | HAM | HT Amplification Mix | 
| 1 | HPM | HT Amp Premix | 
| 1 | HDR | HT Denaturation Mix (contains formamide) | 
| 1 | HP11 | Primer Mix – Read 2 | 
| 1 | HP14 | Indexing Primer Mix | 
| Quantity | Reagent | Description | 
| 1 | HRM | HT Resynthesis Mix | 
| 1 | HDR | HT Denaturation Mix | 
| 1 | HP12 | Index 1 Primer Mix | 
| Quantity | Accessory | Purpose | 
| 1 | Flow cell gaskets (package of 4) | Replace the flow cell gaskets between runs. | 
| 1 | Flow cell storage tube with storage buffer, 50 ml | Store the flow cell between clustering and sequencing. | 
| 1 | Funnel bottle caps (package of 8) | Replace the caps on SBS reagent bottles before loading reagents. | 
| Kit Component | Storage | Description | 
| PW1 | 15°C to 30°C | Wash Buffer | 
| HB1 | 15°C to 30°C | High Throughput SBS Buffer 1 | 
| HB2 | 15°C to 30°C | High Throughput SBS Buffer 2 | 
| Kit Component | Storage | Description | 
| HCM | -25°C to -15°C | High Throughput Cleavage Mix | 
| HIM | -25°C to -15°C | High Throughput Incorporation Mix | 
| HSM | -25°C to -15°C | High Throughput Scan Mix |